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Magnesium Glycinate vs Citrate for Perimenopause: Which Form Is Right for You?

Magnesium glycinate vs citrate for perimenopause: which form helps sleep, anxiety, and muscle symptoms , and which eases constipation. A clear, honest comparison.

8 min readFebruary 27, 2026

Why Magnesium Keeps Coming Up in Perimenopause

You've probably seen magnesium recommended in every perimenopause group, forum, and wellness account you follow. And there's a reason it keeps showing up. Magnesium is involved in over 300 biochemical processes in your body, including sleep regulation, nerve function, muscle relaxation, and mood. During perimenopause, fluctuating estrogen levels affect how your body uses and absorbs magnesium, and many people find their levels drop right when they need this mineral most. The problem is that not all magnesium supplements are the same. Magnesium glycinate and magnesium citrate are the two most commonly recommended forms, and they work quite differently. Choosing the right one depends on what symptoms you're trying to ease.

What Is Magnesium Glycinate?

Magnesium glycinate is magnesium bound to glycine, an amino acid that also functions as a calming neurotransmitter in your brain. This binding does two things. First, it makes the magnesium easier to absorb through your gut lining. Second, the glycine itself has mild relaxing effects that complement the magnesium. Because magnesium glycinate is gentle on the digestive system, it is less likely to cause loose stools even at higher doses. This makes it the preferred form for people who want to take magnesium daily without gastrointestinal side effects. Studies have examined doses ranging from 200 to 400 mg of elemental magnesium from glycinate forms for sleep and anxiety outcomes. Talk to your healthcare provider about the right dose for your situation.

What Is Magnesium Citrate?

Magnesium citrate is magnesium bound to citric acid. It is also well absorbed, slightly less so than glycinate, but still significantly better than cheaper forms like magnesium oxide. The key difference is that magnesium citrate draws water into the intestines. This creates a mild laxative effect, which can be a feature or a bug depending on your situation. If perimenopause has brought along constipation, sluggish digestion, or bloating, magnesium citrate may address two problems at once. If your digestion is already sensitive or loose, it could make things worse. Studies have examined doses of 200 to 350 mg of elemental magnesium from citrate forms for constipation and muscle function. Talk to your healthcare provider about the right dose for your situation.

Head-to-Head: Which Symptoms Does Each Target Better?

Sleep disruption is one of the most common perimenopausal complaints, and magnesium glycinate has the stronger evidence base here. The glycine component specifically influences sleep architecture, helping you fall asleep faster and spend more time in restorative sleep stages. Research has also examined magnesium's role in regulating cortisol and supporting GABA, the calming neurotransmitter that anxiety depletes. For sleep and anxiety, glycinate is generally the preferred form. For constipation and muscle cramps, the picture is more nuanced. Magnesium citrate reliably softens stool and supports bowel regularity. Both forms can ease muscle cramps and tension since magnesium is essential for muscle relaxation, but citrate's osmotic action in the gut means it gets absorbed and distributed quickly. If your main concern is nighttime leg cramps paired with constipation, citrate may handle both at once.

Side Effects: What to Expect from Each

Magnesium glycinate has a very low side effect profile. Because the glycine molecule helps ferry the magnesium across the gut wall efficiently, very little sits in the intestine to draw water. Most people tolerate it well even at higher doses. The most common complaint is mild drowsiness, which is actually useful if you're taking it before bed. Magnesium citrate's main side effect is its laxative effect. At low to moderate doses, this might simply mean softer stools and more regular bowel movements. At higher doses, or if you're already prone to loose stools, it can cause diarrhea, cramping, and urgent bathroom trips. If you take citrate and find it too strong, you can try a lower dose or switch to glycinate. Both forms can cause nausea if taken on an empty stomach, so taking either with food is generally a good practice.

Cost and Availability

Magnesium glycinate tends to cost slightly more than citrate. The chelation process that binds magnesium to glycine adds to the manufacturing cost, and you'll typically pay 10 to 30 percent more per serving compared to citrate. Both forms are widely available in pharmacies, health food stores, and online. Generic and store-brand versions of both exist and are generally comparable to name-brand options as long as the form (glycinate or citrate) is clearly labeled. Powder forms of both are available and can be easier to adjust for dose. Some people find powders more affordable than capsules when buying in larger quantities.

Can You Take Both?

Some people do combine them, typically taking magnesium glycinate at night for sleep and a lower dose of magnesium citrate in the morning to support digestion. If you go this route, be mindful of your total daily magnesium intake from all sources, including food. The tolerable upper limit from supplements is generally set at 350 mg of elemental magnesium per day for adults. Going above that doesn't automatically cause harm, but it does increase the risk of digestive side effects. If you're considering combining forms, talk to your healthcare provider first, especially if you have kidney issues, since the kidneys handle magnesium excretion and impaired kidney function changes the calculation.

How to Decide Which Form to Start With

Start with your main complaint. If sleep, anxiety, or general nervous system support is what you're after, magnesium glycinate is typically the better fit. If constipation or slow digestion is your primary concern, or if you want both digestive support and general magnesium benefits, citrate is worth trying. If you have a sensitive stomach or a history of loose stools, lean toward glycinate regardless of your other symptoms. Tracking how you respond matters. You might not notice a difference in sleep quality for one to two weeks, and changes in digestion can happen faster. Using PeriPlan to log your sleep, mood, and energy daily can help you spot whether magnesium is actually shifting the patterns you're trying to change, or whether your body needs a different approach.

What This Comparison Cannot Tell You

Neither magnesium glycinate nor citrate is a substitute for medical care. If your sleep disruption is severe, if your anxiety is affecting your daily life, or if constipation has lasted more than a few weeks, those are conversations to have with your healthcare provider. Magnesium can also interact with certain medications, including antibiotics, diuretics, and medications for heart rhythm disorders. If you take any prescription medications, check with your provider before adding a magnesium supplement. The good news is that magnesium is one of the most studied and generally safe supplements in the perimenopause toolkit. You just need to choose the right form for what your body actually needs right now.

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Medical disclaimerThis content is for informational purposes only and does not constitute medical advice, diagnosis, or treatment. Always consult a qualified healthcare provider with questions about a medical condition. PeriPlan is not a substitute for professional medical advice. If you are experiencing severe or concerning symptoms, please contact your doctor or emergency services immediately.

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