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Perimenopause vs Dysautonomia: How to Tell the Difference

Heart palpitations, dizziness, and fatigue are common to both perimenopause and dysautonomia. Discover the key differences and what to ask your doctor.

5 min readFebruary 28, 2026

Two Conditions with Surprisingly Similar Faces

Dysautonomia is an umbrella term for conditions involving dysfunction of the autonomic nervous system, the part of the nervous system that regulates heart rate, blood pressure, digestion, and temperature. Perimenopause involves dramatic shifts in estrogen and progesterone that affect many of those same systems. The result is two very different underlying processes that can produce a near-identical surface picture: racing heart, dizziness on standing, sweating, fatigue, brain fog, and difficulty tolerating exercise. Women with undiagnosed dysautonomia are frequently told their symptoms are hormonal, and women in perimenopause are sometimes sent down lengthy cardiac investigations.

What Dysautonomia Actually Is

The most common forms of dysautonomia include postural orthostatic tachycardia syndrome (POTS), vasovagal syncope, and orthostatic hypotension. In POTS, heart rate increases by 30 or more beats per minute within ten minutes of standing, producing dizziness, palpitations, and sometimes fainting. Dysautonomia is significantly more common in women and often emerges or worsens after pregnancy, viral illness, or other hormonal shifts, which is part of why perimenopause and dysautonomia can interact or be confused with one another.

Symptoms Shared by Both Conditions

Heart palpitations are one of the most reported perimenopause symptoms and are also central to POTS and other dysautonomia presentations. Fatigue that does not improve with sleep is common to both. Temperature dysregulation, including sweating and feeling too hot or too cold, appears in each condition. Brain fog, difficulty concentrating, and poor memory feature in both. Headaches, particularly those that worsen when upright, occur in dysautonomia and are also frequently reported during perimenopause. Nausea and gastrointestinal upset appear in both as well.

Symptoms That Point More Toward Dysautonomia

The positional nature of symptoms is the most important distinguishing feature. In dysautonomia, particularly POTS, symptoms are typically much worse when standing and improve when lying down. This reproducible postural pattern is not a feature of perimenopause. Fainting or near-fainting on standing, extreme sensitivity to heat that causes immediate worsening of all symptoms, and significant exercise intolerance where even mild activity triggers prolonged symptom flares are more characteristic of dysautonomia. A resting heart rate that is consistently elevated, or one that spikes dramatically when you move from sitting to standing, warrants investigation beyond hormonal testing.

Symptoms That Point More Toward Perimenopause

Changes to the menstrual cycle are the clearest perimenopause indicator. Irregular periods, cycles that are shorter or longer than usual, heavier or lighter flow, and skipped periods all point toward ovarian hormone transition. Hot flashes with the characteristic sudden wave of heat followed by sweating and flushing are specific to the hormonal context of perimenopause. Night sweats that wake you from sleep, vaginal dryness, and mood shifts that track with your cycle also point strongly toward perimenopause rather than an autonomic disorder.

How to Get an Accurate Diagnosis

The tilt table test is the gold standard for diagnosing dysautonomia. During this test, you are tilted from horizontal to near-vertical while heart rate and blood pressure are monitored continuously. A simpler home or clinic version, the NASA lean test or poor man's tilt table test, involves lying for ten minutes then standing for ten minutes while recording heart rate. For perimenopause, tracking symptoms in relation to the menstrual cycle over two to three months provides the most useful clinical picture. FSH and estradiol testing can support a perimenopause diagnosis but levels fluctuate, so a single test is rarely definitive.

When Perimenopause and Dysautonomia Overlap

Research suggests that declining estrogen during perimenopause can worsen autonomic nervous system function and may unmask underlying dysautonomia in women who were previously compensating well. Some women with POTS report significant worsening of their symptoms during perimenopause, and some find that HRT improves autonomic stability. If you have a clear perimenopause diagnosis but your palpitations and dizziness are particularly severe or postural, it is worth raising dysautonomia with your GP. Logging your symptoms carefully, including what you were doing when they occurred and whether lying down helped, gives doctors the information they need to investigate both possibilities properly. PeriPlan can help you track symptom patterns over time so you have a clear record to share at appointments.

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Medical disclaimerThis content is for informational purposes only and does not constitute medical advice, diagnosis, or treatment. Always consult a qualified healthcare provider with questions about a medical condition. PeriPlan is not a substitute for professional medical advice. If you are experiencing severe or concerning symptoms, please contact your doctor or emergency services immediately.

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