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Perimenopause vs Long COVID: Overlapping Symptoms Explained

Brain fog, fatigue, and heart palpitations appear in both perimenopause and long COVID. Learn how to tell the two conditions apart.

5 min readFebruary 28, 2026

Why the Comparison Matters

Women in their 40s and early 50s are statistically among the most affected by long COVID, and they are also the age group most likely to be entering perimenopause. When brain fog, crushing fatigue, heart palpitations, and sleep disruption appear together, it can be genuinely difficult to know which condition is driving the symptoms, or whether both are present at the same time. Getting clarity matters because the management approaches differ considerably. Mistaking one for the other can lead to years of delayed support.

Shared Symptoms at a Glance

Both conditions produce fatigue that does not improve with rest, difficulty concentrating, disturbed sleep, and a general sense of feeling unwell. Heart palpitations and shortness of breath on exertion appear in both. Mood changes, including anxiety and low mood, are common to each. Joint pain and headaches feature prominently in long COVID and are also reported frequently during perimenopause. The overlap is substantial enough that some researchers have proposed shared mechanisms involving hormonal dysregulation, mast cell activation, and autonomic nervous system disruption.

Symptoms That Point More Strongly to Perimenopause

Hot flashes and night sweats are among the most characteristic perimenopause experiences and are not typical of long COVID. Irregular periods or a noticeable change in cycle length, flow, or timing is another strong indicator that ovarian hormones are shifting. Vaginal dryness and discomfort during sex are estrogen-related symptoms that long COVID does not produce. Sudden mood swings timed around the menstrual cycle also tend to point toward hormonal fluctuation rather than post-viral illness.

Symptoms That Point More Strongly to Long COVID

Post-exertional malaise, where symptoms worsen significantly for 24 to 72 hours after even mild physical or mental effort, is a hallmark of long COVID and is not characteristic of perimenopause. A documented COVID-19 infection in the past one to two years followed by symptoms that never fully resolved is the most important piece of history. Loss of smell or taste, persistent cough, and chest tightness are more specific to the post-viral picture. Some people with long COVID also experience a relapsing-remitting pattern where they feel better for a week and then crash again.

How Doctors Investigate

For perimenopause, a blood test measuring follicle-stimulating hormone (FSH) and estradiol can be helpful, though hormone levels fluctuate considerably during the perimenopausal transition and a single result may not be conclusive. Tracking symptoms over several months in relation to the menstrual cycle gives clinicians useful context. For long COVID, investigation tends to focus on ruling out organ damage, checking inflammatory markers, and assessing autonomic function. An experienced GP or specialist may need to manage both lines of enquiry simultaneously, particularly in women who had COVID in their early 40s.

Can Both Be Present at the Same Time?

Yes, and this is more common than many people realise. A woman who was 42 when she contracted COVID-19 in 2020 or 2021 may now be 46 and in full perimenopause while still carrying some degree of post-viral burden. Research published in recent years suggests that COVID-19 infection may accelerate the onset of menopause-related hormonal changes in some women, though the evidence is still emerging. If symptoms are unusually severe or treatment responses are limited, it is worth considering that both processes may be running in parallel.

Practical Steps for Getting Answers

Keeping a detailed symptom log is one of the most useful things you can do before a medical appointment. Note whether symptoms are constant or whether they follow a pattern related to your cycle, exercise, or time of day. PeriPlan allows you to log symptoms and track patterns over time, which can give you concrete data to take to your GP rather than relying on memory. Asking specifically for a referral to a menopause specialist or a long COVID clinic, rather than accepting a general referral, tends to produce faster and more useful results. You do not have to choose between the two investigations at the outset.

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Medical disclaimerThis content is for informational purposes only and does not constitute medical advice, diagnosis, or treatment. Always consult a qualified healthcare provider with questions about a medical condition. PeriPlan is not a substitute for professional medical advice. If you are experiencing severe or concerning symptoms, please contact your doctor or emergency services immediately.

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